Illumina whole genome shotgun sequencing of genomic DNA paired-end li... - SRA

SRX340552: Illumina whole genome shotgun sequencing of genomic DNA paired-end library 'Solexa-149749' containing sample 'Escherichia coli UMEA 3178-1'
2 ILLUMINA (Illumina HiSeq 2000) runs: 4.7M spots, 953.7M bases, 539.7Mb downloads

UUID: 00fceb11-6945-4c96-8901-23a9dbabb535

Design: jumping library

Submitted by: Broad Institute (BI)

Study: E coli UTI Bacteremia

PRJNA186309 • SRP019670 • All experiments • All runs

Sample: Pathogen bacterial, clinical or host-associated sample from Escherichia coli UMEA 3178-1

SAMN01885919 • SRS402309 • All experiments • All runs

Organism: Escherichia coli UMEA 3178-1

Library:

Name: Solexa-149749

Instrument: Illumina HiSeq 2000

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Spot descriptor:

1 forward102 reverse

Experiment attributes: (show all 12 attributes...) (hide...)

analysis_type: AssemblyWithReference

gssr_id: 301217.0

library_type: IlluminaStufferlessJump

lsid: broadinstitute.org:bsp.prod.sample:425N8

material_type: DNA:DNA Somatic

product_order: PDO-291

product_part_number: P-MCV-0001

project: G30239

research_project: RP-192

root_sample_id: SM-2TD4W

sample_id: SM-425N8

work_request: 35883

Pipeline: show...hide...

Name	Step	Program	Version	Notes
base caller	2013-05-08 00:28:38.0	GAPipeline	RTA1.15.19.5	Sequencer Application 1.6.8.6

Runs: 2 runs, 4.7M spots, 953.7M bases, 539.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR958616	2,348,577	474.4M	268.4Mb	2013-08-28
SRR958617	2,372,874	479.3M	271.3Mb	2013-08-28

ID:: 478336

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